miRBase entry: pte-mir-71-1

Stem-loop pte-mir-71-1


Accession
MI0038092
Description
Parasteatoda tepidariorum pte-mir-71-1 precursor miRNA

Literature search
2 open access papers mention pte-mir-71-1
(14 sentences)

Sequence

UGAAAGACAUGGGUAGUGAGAUGucuuaauuccccaUCUCACUACCUUGUCUUUGACG
..(((((((.(((((((((((((...........))))))))))))))))))))....

Structure
--UG       U             ucuu 
    AAAGACA GGGUAGUGAGAUG    a
    ||||||| |||||||||||||    a
    UUUCUGU UCCAUCACUCUac    u
GCAG       -             cccu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 356520-356577 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-71-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-71-5p

Accession MIMAT0046219
Description Parasteatoda tepidariorum pte-miR-71-5p mature miRNA
Sequence 1 - UGAAAGACAUGGGUAGUGAGAUG - 23
Evidence experimental
Illumina [1]

Mature pte-miR-71-3p

Accession MIMAT0046220
Description Parasteatoda tepidariorum pte-miR-71-3p mature miRNA
Sequence 37 - UCUCACUACCUUGUCUUUGACG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144