miRBase entry: pte-mir-35r-2

Stem-loop pte-mir-35r-2


Accession
MI0038083
Description
Parasteatoda tepidariorum pte-mir-35r-2 precursor miRNA


Sequence

AGAAAUUUUUCAUCCCAGUUAAUUuuauuuuugaauuaaaUCACUGGGAGGAAAGUUUCUAU
(((((((((((.(((((((((((((.......))))))....))))))))))))))))))..

Structure
--           A       ----      ua 
  AGAAAUUUUUC UCCCAGU    UAAUUu  u
  ||||||||||| |||||||    ||||||  u
  UCUUUGAAAGG AGGGUCA    auuaag  u
UA           -       CUaa      uu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_3068: 20244-20305 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pte-mir-35r-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35r-5p

Accession MIMAT0046208
Description Parasteatoda tepidariorum pte-miR-35r-5p mature miRNA
Sequence 1 - AGAAAUUUUUCAUCCCAGUUAAUU - 24
Evidence experimental
Illumina [1]

Mature pte-miR-35r-3p

Accession MIMAT0046209
Description Parasteatoda tepidariorum pte-miR-35r-3p mature miRNA
Sequence 41 - UCACUGGGAGGAAAGUUUCUAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144