miRBase entry: pte-mir-35w

Stem-loop pte-mir-35w


Accession
MI0038077
Description
Parasteatoda tepidariorum pte-mir-35w precursor miRNA


Sequence

AGCAAUGAAUGGCUUGGUGGCagugucucgccugACACCAGUUCGUUUAUUUGCUUU
((((((((((((.((((((.(((.((...))))).)))))).))))))).)))))..

Structure
--     -       C      G   u  c 
  AGCAA UGAAUGG UUGGUG Cag gu  
  ||||| ||||||| |||||| ||| || u
  UCGUU AUUUGCU GACCAC guc cg  
UU     U       U      A   -  c 


Annotation confidence Not enough data
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Genome context
Scf5bK3_73: 4665401-4665457 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pte-mir-35w
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35w-5p

Accession MIMAT0046198
Description Parasteatoda tepidariorum pte-miR-35w-5p mature miRNA
Sequence 1 - AGCAAUGAAUGGCUUGGUGGC - 21
Evidence experimental
Illumina [1]

Mature pte-miR-35w-3p

Accession MIMAT0046199
Description Parasteatoda tepidariorum pte-miR-35w-3p mature miRNA
Sequence 35 - ACACCAGUUCGUUUAUUUGCUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144