miRBase entry: pte-mir-35e-1

Stem-loop pte-mir-35e-1

Accession

MI0038066

Description

Parasteatoda tepidariorum pte-mir-35e-1 precursor miRNA

Sequence

UCGAAUCUGUCACUUCGGUAAUUucaauucaauaaUCACCGGGUGAAAGAUUUGCUU
.(((((((.(((((.((((.(((..........))).))))))))).)))))))...

Structure

--U       G     U    A   ucaa 
   CGAAUCU UCACU CGGU AUU    u
   ||||||| ||||| |||| |||     
   GUUUAGA AGUGG GCCA Uaa    u
UUC       A     -    C   uaac

Annotation confidence Not enough data

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Genome context

Scf5bK3_786: 6359147-6359203 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pte-mir-35e-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-35e-5p

Accession	MIMAT0046178
Description	Parasteatoda tepidariorum pte-miR-35e-5p mature miRNA
Sequence	1 - UCGAAUCUGUCACUUCGGUAAUU - 23
Evidence	experimental Illumina [1]

Mature pte-miR-35e-3p

Accession	MIMAT0046179
Description	Parasteatoda tepidariorum pte-miR-35e-3p mature miRNA
Sequence	36 - UCACCGGGUGAAAGAUUUGCUU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144