miRBase entry: pte-mir-35q-1

Stem-loop pte-mir-35q-1

Accession

MI0038058

Description

Parasteatoda tepidariorum pte-mir-35q-1 precursor miRNA

Sequence

CGAAAUAGUUUUAUCUGGUUACUcaaaauuaaaauuguCACCGGAUGAACUAUUUUGGUU
(((((((((((.(((((((.((..............)).))))))))))))))))))...

Structure

---           U       U  Ucaaaa 
   CGAAAUAGUUU AUCUGGU AC      u
   ||||||||||| ||||||| ||       
   GUUUUAUCAAG UAGGCCA ug      u
UUG           -       C  uuaaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Scf5bK3_3068: 17321-17380 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pte-mir-35q-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-35q-1-5p

Accession	MIMAT0046166
Description	Parasteatoda tepidariorum pte-miR-35q-1-5p mature miRNA
Sequence	1 - CGAAAUAGUUUUAUCUGGUUACU - 23
Evidence	experimental Illumina [1]

Mature pte-miR-35q-3p

Accession	MIMAT0046167
Description	Parasteatoda tepidariorum pte-miR-35q-3p mature miRNA
Sequence	39 - CACCGGAUGAACUAUUUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144