miRBase entry: pte-mir-35o-1

Stem-loop pte-mir-35o-1


Accession
MI0038057
Description
Parasteatoda tepidariorum pte-mir-35o-1 precursor miRNA


Sequence

AGUUGUUAAUAGCUCGGUGAUggagaauuacccuUCACCGGGAGGUUAAUAUGCUUU
((((((((((..((((((((.((........)).))))))))..))))))).)))..

Structure
--   -       AG        U  aga 
  AGU UGUUAAU  CUCGGUGA gg   a
  ||| |||||||  |||||||| ||    
  UCG AUAAUUG  GGGCCACU cc   u
UU   U       GA        u  cau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_73: 4659837-4659893 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pte-mir-35o-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35o-5p

Accession MIMAT0046164
Description Parasteatoda tepidariorum pte-miR-35o-5p mature miRNA
Sequence 1 - AGUUGUUAAUAGCUCGGUGAU - 21
Evidence experimental
Illumina [1]

Mature pte-miR-35o-3p

Accession MIMAT0046165
Description Parasteatoda tepidariorum pte-miR-35o-3p mature miRNA
Sequence 35 - UCACCGGGAGGUUAAUAUGCUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144