Stem-loop pte-mir-317

Accession

MI0038054

Description

Parasteatoda tepidariorum pte-mir-317 precursor miRNA

Sequence

CGAGAGCCUCCCUGCGUUCACAagugccguuugcuuucugUGAACACAGCUGGUGGUAUCUCAGU
.(((((((.(((((.(((((((...((.....))....))))))).)))..)).))).))))...

Structure

--C    -   U  --   C       -agu  c 
   GAGA GCC CC  CUG GUUCACA    gc g
   |||| ||| ||  ||| |||||||    || u
   CUCU UGG GG  GAC CAAGUgu    cg u
UGA    A   U  UC   A       cuuu  u 

Annotation confidence Not enough data

Genome context

Scf5bK3_269: 1823433-1823497 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-317

Mature pte-miR-317-5p

• Accession: MIMAT0046158
• Description: Parasteatoda tepidariorum pte-miR-317-5p mature miRNA
• Sequence: 1 - CGAGAGCCUCCCUGCGUUCACA - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-317-3p

• Accession: MIMAT0046159
• Description: Parasteatoda tepidariorum pte-miR-317-3p mature miRNA
• Sequence: 41 - UGAACACAGCUGGUGGUAUCUCAGU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144