miRBase entry: pte-mir-2d

Stem-loop pte-mir-2d


Accession
MI0038046
Description
Parasteatoda tepidariorum pte-mir-2d precursor miRNA

Literature search
2 open access papers mention pte-mir-2d
(17 sentences)

Sequence

GGGUCAAACUGAUGCUGUGAUGUGuaaauucuucaucaUAUCACAGCCAGCUUUGAUGAGC
..(((((((((..(((((((((((............)))))))))))))).))))))....

Structure
--GG      -   AU           uaaau 
    GUCAAA CUG  GCUGUGAUGUG     u
    |||||| |||  |||||||||||      
    UAGUUU GAC  CGACACUAUac     c
CGAG      C   --           uacuu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 359448-359508 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-2d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2d-5p

Accession MIMAT0046143
Description Parasteatoda tepidariorum pte-miR-2d-5p mature miRNA
Sequence 1 - GGGUCAAACUGAUGCUGUGAUGUG - 24
Evidence experimental
Illumina [1]

Mature pte-miR-2d-3p

Accession MIMAT0046144
Description Parasteatoda tepidariorum pte-miR-2d-3p mature miRNA
Sequence 39 - UAUCACAGCCAGCUUUGAUGAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144