Stem-loop pte-mir-2b-2

Accession

MI0038044

Description

Parasteatoda tepidariorum pte-mir-2b-2 precursor miRNA

Literature search

2 open access papers mention pte-mir-2b-2
(17 sentences)

Sequence

CUCACAAAGUGGGUGUGUAUAUGuuaguagaauuucaUAUCACAGCCAGCUUUGAUGAGCG
((((((((((((.((((.(((((..(......)..))))))))).))).))))).))))..

Structure

--    -     -   G    U     uu gu 
  CUCA CAAAG UGG UGUG AUAUG  a  a
  |||| ||||| ||| |||| |||||  |   
  GAGU GUUUC ACC ACAC UAUac  u  g
GC    A     G   G    -     uu aa 

Annotation confidence Not enough data

Genome context

Scf5bK3_5995: 359128-359188 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from pte-mir-2b-2

Mature pte-miR-2b-3p

• Accession: MIMAT0046139
• Description: Parasteatoda tepidariorum pte-miR-2b-3p mature miRNA
• Sequence: 38 - UAUCACAGCCAGCUUUGAUGAGCG - 61
• Evidence: experimental ; Illumina [1]

Mature pte-miR-2b-2-5p

• Accession: MIMAT0046140
• Description: Parasteatoda tepidariorum pte-miR-2b-2-5p mature miRNA
• Sequence: 1 - CUCACAAAGUGGGUGUGUAUAUG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144