Stem-loop pte-mir-2b-1

Accession

MI0038043

Description

Parasteatoda tepidariorum pte-mir-2b-1 precursor miRNA

Literature search

2 open access papers mention pte-mir-2b-1
(19 sentences)

Sequence

GUUGUCAAAGUGGCUGUGACAUGuuagagauuuaugcuucaUAUCACAGCCAGCUUUGAUGAGCG
(((((((((((((((((((.(((...(((.......)))))).))))))))).))))))).))).

Structure

-   -       -         C   uua   au 
 GUU GUCAAAG UGGCUGUGA AUG   gag  u
 ||| ||||||| ||||||||| |||   |||  u
 CGA UAGUUUC ACCGACACU Uac   uuc  a
G   G       G         A   ---   gu 

Annotation confidence Not enough data

Genome context

Scf5bK3_595: 726122-726186 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pte-mir-2b-1

Mature pte-miR-2b-5p

• Accession: MIMAT0046138
• Description: Parasteatoda tepidariorum pte-miR-2b-5p mature miRNA
• Sequence: 1 - GUUGUCAAAGUGGCUGUGACAUG - 23
• Evidence: experimental ; Illumina [1]

Mature pte-miR-2b-3p

• Accession: MIMAT0046139
• Description: Parasteatoda tepidariorum pte-miR-2b-3p mature miRNA
• Sequence: 42 - UAUCACAGCCAGCUUUGAUGAGCG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144