miRBase entry: pte-mir-29b

Stem-loop pte-mir-29b

Accession

MI0038041

Description

Parasteatoda tepidariorum pte-mir-29b precursor miRNA

Sequence

CUGAUCUCAGAUGGUGGAUAGAuggaucauugggaaaugucUAGCACCAUUUGAAAUCAGCGC
(((((.((((((((((..((((((..((.....))..)))))).)))))))))).)))))...

Structure

---     C          GA      ga  a 
   CUGAU UCAGAUGGUG  UAGAug  uc u
   ||||| ||||||||||  ||||||  || u
   GACUA AGUUUACCAC  AUcugu  ag g
CGC     A          -G      aa  g

Annotation confidence Not enough data

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Genome context

Scf5bK3_306: 7670776-7670838 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-29b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-29b-5p

Accession	MIMAT0046134
Description	Parasteatoda tepidariorum pte-miR-29b-5p mature miRNA
Sequence	1 - CUGAUCUCAGAUGGUGGAUAGA - 22
Evidence	experimental Illumina [1]

Mature pte-miR-29b-3p

Accession	MIMAT0046135
Description	Parasteatoda tepidariorum pte-miR-29b-3p mature miRNA
Sequence	42 - UAGCACCAUUUGAAAUCAGCGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144