Stem-loop pte-mir-279

Accession

MI0038037

Description

Parasteatoda tepidariorum pte-mir-279 precursor miRNA

Literature search

1 open access papers mention pte-mir-279
(1 sentences)

Sequence

GGUGAGUGGGAUUUUAGUCCUGuaucuaaaacacuaucaUGACUAGAUCCACACUCAUCCA
((((((((((((((.((((.((...............)).)))))))))).))))))))..

Structure

--        -      U    C  uaucua 
  GGUGAGUG GGAUUU AGUC UG      a
  |||||||| |||||| |||| ||      a
  CUACUCAC CCUAGA UCAG ac      a
AC        A      -    U  uaucac 

Annotation confidence Not enough data

Genome context

Scf5bK3_238.1: 754887-754947 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-279

Mature pte-miR-279-5p

• Accession: MIMAT0046126
• Description: Parasteatoda tepidariorum pte-miR-279-5p mature miRNA
• Sequence: 1 - GGUGAGUGGGAUUUUAGUCCUG - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-279-3p

• Accession: MIMAT0046127
• Description: Parasteatoda tepidariorum pte-miR-279-3p mature miRNA
• Sequence: 40 - UGACUAGAUCCACACUCAUCCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144