miRBase entry: pte-mir-35a

Stem-loop pte-mir-35a


Accession
MI0038036
Description
Parasteatoda tepidariorum pte-mir-35a precursor miRNA


Sequence

GCAAGUUUUUCACCUUGGUUAUUuauauuuguuaaUCACCGGGUGGAAAAUUUGAGC
.((((((((((((((((((((...........))))))..))))))))))))))...

Structure
--G              --      UUua 
   CAAGUUUUUCACCU  UGGUUA    u
   ||||||||||||||  ||||||    a
   GUUUAAAAGGUGGG  ACUaau    u
CGA              CC      uguu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_786: 6401680-6401736 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from pte-mir-35a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35a-5p

Accession MIMAT0046124
Description Parasteatoda tepidariorum pte-miR-35a-5p mature miRNA
Sequence 1 - GCAAGUUUUUCACCUUGGUUAUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35a-3p

Accession MIMAT0046125
Description Parasteatoda tepidariorum pte-miR-35a-3p mature miRNA
Sequence 36 - UCACCGGGUGGAAAAUUUGAGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144