miRBase entry: pte-mir-275

Stem-loop pte-mir-275

Accession

MI0038029

Description

Parasteatoda tepidariorum pte-mir-275 precursor miRNA

Literature search

1 open access papers mention pte-mir-275
(2 sentences)

Sequence

ACGUGCUGCAUCAGGUGCUUGUGACUgcgcccuuucagauaagUCAGGUACCUGAAGUAGCGCGCGGA
.((((((((.(((((((((..(((((...............)))))))))))))).))))))))....

Structure

---A        A         UG     gcgccc 
    CGUGCUGC UCAGGUGCU  UGACU      u
    |||||||| |||||||||  |||||      u
    GCGCGAUG AGUCCAUGG  ACUga      u
AGGC        A         --     auagac

Annotation confidence Not enough data

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Genome context

Scf5bK3_1778: 109272-109339 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-275-5p

Accession	MIMAT0046111
Description	Parasteatoda tepidariorum pte-miR-275-5p mature miRNA
Sequence	1 - ACGUGCUGCAUCAGGUGCUUGUGACU - 26
Evidence	experimental Illumina [1]

Mature pte-miR-275-3p

Accession	MIMAT0046112
Description	Parasteatoda tepidariorum pte-miR-275-3p mature miRNA
Sequence	44 - UCAGGUACCUGAAGUAGCGCGCGGA - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144