miRBase entry: pte-mir-193a

Stem-loop pte-mir-193a


Accession
MI0038024
Description
Parasteatoda tepidariorum pte-mir-193a precursor miRNA

Literature search
1 open access papers mention pte-mir-193a
(2 sentences)

Sequence

CGGGAUUUAGCUGGACUGAUGGAcugacuucagaaauugucUACUGGCCUGUUAAGUCCCGAG
(((((((((((.((.(((.(((((..............))))).))))).)))))))))))..

Structure
--           U  A   A     ugacuu 
  CGGGAUUUAGC GG CUG UGGAc      c
  ||||||||||| || ||| |||||       
  GCCCUGAAUUG CC GGU AUcug      a
GA           U  -   C     uuaaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Scf5bK3_535: 370440-370502 [+]

Database links

Mature pte-miR-193a-5p

Accession MIMAT0046101
Description Parasteatoda tepidariorum pte-miR-193a-5p mature miRNA
Sequence 1 - CGGGAUUUAGCUGGACUGAUGGA - 23
Evidence experimental
Illumina [1]

Mature pte-miR-193a-3p

Accession MIMAT0046102
Description Parasteatoda tepidariorum pte-miR-193a-3p mature miRNA
Sequence 42 - UACUGGCCUGUUAAGUCCCGAG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144