miRBase entry: pte-mir-100b

Stem-loop pte-mir-100b


Accession
MI0038018
Description
Parasteatoda tepidariorum pte-mir-100b precursor miRNA

Literature search
1 open access papers mention pte-mir-100b
(5 sentences)

Sequence

AACCCGUAGAUCCGAACUUGUGuccuuuguagaccucccACAAGCUCGCCUCUACGGGUCU
.(((((((((..(((.((((((................)))))).)))..)))))))))..

Structure
-A         UC   A      uccuuug 
  ACCCGUAGA  CGA CUUGUG       u
  |||||||||  ||| ||||||        
  UGGGCAUCU  GCU GAACAc       a
UC         CC   C      ccuccag 


Annotation confidence Not enough data
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Genome context
Scf5bK3_97: 8286326-8286386 [+]

Database links

Mature pte-miR-100b-5p

Accession MIMAT0046090
Description Parasteatoda tepidariorum pte-miR-100b-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

Mature pte-miR-100b-3p

Accession MIMAT0046091
Description Parasteatoda tepidariorum pte-miR-100b-3p mature miRNA
Sequence 40 - ACAAGCUCGCCUCUACGGGUCU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144