miRBase entry: pte-mir-1

Stem-loop pte-mir-1


Accession
MI0038015
Description
Parasteatoda tepidariorum pte-mir-1 precursor miRNA


Sequence

CCGUGCUUCCUUACUUCCCAUAucuucuuaaagagucguaUGGAAUGUAAAGAAGUAUGGAG
(((((((((.((((...((((((.((((...))))..))))))...)))).)))))))))..

Structure
--         C    UUC      -c    u 
  CCGUGCUUC UUAC   CCAUAu  uucu  
  ||||||||| ||||   ||||||  |||| a
  GGUAUGAAG AAUG   GGUaug  gaga  
GA         A    UAA      cu    a 


Annotation confidence Not enough data
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Genome context
Scf5bK3_269: 5291341-5291402 [+]

Database links

Mature pte-miR-1-5p

Accession MIMAT0046084
Description Parasteatoda tepidariorum pte-miR-1-5p mature miRNA
Sequence 1 - CCGUGCUUCCUUACUUCCCAUA - 22
Evidence experimental
Illumina [1]

Mature pte-miR-1-3p

Accession MIMAT0046085
Description Parasteatoda tepidariorum pte-miR-1-3p mature miRNA
Sequence 41 - UGGAAUGUAAAGAAGUAUGGAG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144