miRBase entry: pte-iab-4-2

Stem-loop pte-iab-4-2

Accession

MI0038011

Description

Parasteatoda tepidariorum pte-iab-4-2 precursor miRNA

Literature search

1 open access papers mention pte-iab-4-2
(1 sentences)

Sequence

UCGUAUACUGAAUGUAUCCUGAguuuaaauuuucCGGUAUACCUUCAGUAUACGUAGC
.(((((((((((.((((((.(((........))).)).)))).)))))))))))....

Structure

---U           U    -  U   uuu 
    CGUAUACUGAA GUAU CC GAg   a
    ||||||||||| |||| || |||    
    GCAUAUGACUU CAUA GG cuu   a
CGAU           C    U  C   uua

Annotation confidence Not enough data

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Genome context

Scf5bK3_833: 1315213-1315270 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-iab-4-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-iab-4-5p

Accession	MIMAT0046077
Description	Parasteatoda tepidariorum pte-iab-4-5p mature miRNA
Sequence	1 - UCGUAUACUGAAUGUAUCCUGA - 22
Evidence	experimental Illumina [1]

Mature pte-iab-4-2-3p

Accession	MIMAT0046079
Description	Parasteatoda tepidariorum pte-iab-4-2-3p mature miRNA
Sequence	35 - CGGUAUACCUUCAGUAUACGUAGC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144