Stem-loop mes-MIR535c

Accession

MI0037916

Description

Manihot esculenta mes-MIR535c precursor miRNA

Literature search

4 open access papers mention mes-MIR535c
(12 sentences)

Sequence

auugccuuagcuuugacauaauuggUUGACGACGAGAGAGAGCACAcuuguuagcauucaugcuguggucaugggcgucuauaagugugcucucugccgucgucauacaauauggucaaagaagguuuaucuu
...(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))))))))))))..))))))))..))))...)))))))))))).......

Structure

----auu     ag       aua    gU        AG               ua  a      - u 
       gccuu  cuuugac   auug  UGACGACG  AGAGAGCACAcuugu  gc uucaug c g
       |||||  |||||||   ||||  ||||||||  |||||||||||||||  || |||||| |  
       uggaa  gaaacug   uaac  acugcugc  ucucucgugugaaua  ug ggguac g u
uucuauu     --       gua    au        cg               uc  c      u g 

Annotation confidence Not enough data

Genome context

scaffold05782: 12520-12652 [-]

Mature mes-miR535c

• Accession: MIMAT0045980
• Description: Manihot esculenta mes-miR535c mature miRNA
• Sequence: 26 - UUGACGACGAGAGAGAGCACA - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85