Stem-loop mes-MIR398

Accession

MI0037907

Description

Manihot esculenta mes-MIR398 precursor miRNA

Literature search

7 open access papers mention mes-MIR398
(10 sentences)

Sequence

uuugaaaauguggaggauuccuacaggagcgaccugagaucacauguggacacccuaagaucuucccuuaucuuccaaggauuguguucuuaUGUGUUCUCAGGUCGCCCCUGccgggcuuccuccgccacuugauga
.........((((((((..(((.((((.(((((((((((.((((((.((((((((((((((........)))))...)))...)))))).)))))).))))))))))).))))..)))..))))))))..........

Structure

-uuugaaaau        uu   -a    a           u      u      ---   ---     cuu 
          guggagga  ccu  cagg gcgaccugaga cacaug ggacac   ccu   aagau   c
          ||||||||  |||  |||| ||||||||||| |||||| ||||||   |||   |||||    
          cgccuccu  ggg  GUCC CGCUGGACUCU GUGUau cuugug   gga   uucua   c
aguaguucac        uc   cc    C           U      u      uua   acc     uuc 

Annotation confidence Low

Genome context

scaffold07991: 99841-99978 [+]

Mature mes-miR398

• Accession: MIMAT0045971
• Description: Manihot esculenta mes-miR398 mature miRNA
• Sequence: 93 - UGUGUUCUCAGGUCGCCCCUG - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85