miRBase entry: tca-mir-11617e

Stem-loop tca-mir-11617e


Accession
MI0037439
Description
Tribolium castaneum tca-mir-11617e precursor miRNA


Sequence

410 reads, 23.0 reads per million, 31 experiments
AGUUGGCAUGGAUGGUACUGUAUagaucauaguaauuaUAGUACUUUCUAUGGCAACUUa
(((((.((((((.(((((((((..............))))))))).)))))).)))))..

Structure
--     G      U         Uagauc 
  AGUUG CAUGGA GGUACUGUA      a
  ||||| |||||| |||||||||       
  UCAAC GUAUCU UCAUGAUau      u
aU     G      U         uaauga 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_007417.3|: 343093-343152 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-11617e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11617e-5p

Accession MIMAT0045599
Description Tribolium castaneum tca-miR-11617e-5p mature miRNA
Sequence 1 - AGUUGGCAUGGAUGGUACUGUAU - 23
Evidence experimental
Illumina [1]

Mature tca-miR-11617e-3p

Accession MIMAT0053509
Description Tribolium castaneum tca-miR-11617e-3p mature miRNA
Sequence 39 - UAGUACUUUCUAUGGCAACUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96