Stem-loop tca-mir-3858a-2

Accession

MI0037420

Description

Tribolium castaneum tca-mir-3858a-2 precursor miRNA

Sequence

214 reads, 29.0 reads per million, 27 experiments

cugcaacuguaacaguuuguuguuuuuuAGUGAAGCGAAGUUUUUUCAUUUuaauaaaaaUGAAACUCUUUUGCUUCUCUAAuaaauacaaauucauucuuccuaacaguauaua
.....(((((...(((((((.((((.((((.(((((((((...(((((((((....)))))))))...))))))))).)))).)))))))))))...........))))).....

Structure

cugca     --------aac       u    u    U         UUU         a 
     acugu           aguuugu guuu uuAG GAAGCGAAG   UUUCAUUUu a
     |||||           ||||||| |||| |||| |||||||||   |||||||||  
     ugaca           uuaaaca uaaa AAUC CUUCGUUUU   AAAGUaaaa u
auaua     auccuucuuac       -    u    U         CUC         a 

Annotation confidence High

Genome context

ref|NC_007421.3|: 9957903-9958017 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3858a-2

Mature tca-miR-3858a-5p

• Accession: MIMAT0045574
• Description: Tribolium castaneum tca-miR-3858a-5p mature miRNA
• Sequence: 29 - AGUGAAGCGAAGUUUUUUCAUUU - 51
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3858a-3p

• Accession: MIMAT0045575
• Description: Tribolium castaneum tca-miR-3858a-3p mature miRNA
• Sequence: 61 - UGAAACUCUUUUGCUUCUCUAA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96