miRBase entry: tca-mir-11623

Stem-loop tca-mir-11623


Accession
MI0037380
Description
Tribolium castaneum tca-mir-11623 precursor miRNA


Sequence

122 reads, 3.0 reads per million, 26 experiments
acACUCGCGUCCGAACGAUCacggcggaggguugauuucgcCGGAUCGGCUCAUGGACGUGGACGA
....(((((((((..(((((.((((((((......))))))))))))).....)))))))))....

Structure
acAC         ---AA     a        gg 
    UCGCGUCCG     CGAUC cggcggag  u
    |||||||||     ||||| ||||||||   
    GGUGCAGGU     GCUAG GCcgcuuu  u
AGCA         ACUCG     -        ag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
ref|NC_007420.3|: 11627642-11627707 [-]

Database links

Mature tca-miR-11623-5p

Accession MIMAT0045519
Description Tribolium castaneum tca-miR-11623-5p mature miRNA
Sequence 3 - ACUCGCGUCCGAACGAUC - 20
Evidence experimental
Illumina [1]

Mature tca-miR-11623-3p

Accession MIMAT0045520
Description Tribolium castaneum tca-miR-11623-3p mature miRNA
Sequence 42 - CGGAUCGGCUCAUGGACGUGGACGA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96