Stem-loop tca-mir-11620

Accession

MI0037373

Description

Tribolium castaneum tca-mir-11620 precursor miRNA

Sequence

240 reads, 7.0 reads per million, 32 experiments

ccgcauguucuagccccuccggcggugcccCAGGUCAACGGAGCCGUGCAUCCUGacgauaucaacgugAUGCCCGGACCGGUGCCCCAUGUcaacgccgcgggccaaggacaggucc
..((.((((((.((((...(((((.((.(...((.((.(((..(((.(((((...(((.......)))))))).))).))).)).))...).)).))))).))))..)))))).))..

Structure

cc  a      -a    cuc     g  c cCA  U  A   AG   U     CUG   au 
  gc uguucu  gccc   cggcg ug c   GG CA CGG  CCG GCAUC   acg  a
  || ||||||  ||||   ||||| || |   || || |||  ||| |||||   |||  u
  ug acagga  cggg   gccgc ac G   CC GU GCC  GGC CGUAg   ugc  c
cc  g      ac    --c     a  U UAC  C  G   -A   C     ---   aa 

Annotation confidence High

Genome context

ref|NC_007417.3|: 8614654-8614771 [+]

Mature tca-miR-11620-5p

• Accession: MIMAT0045510
• Description: Tribolium castaneum tca-miR-11620-5p mature miRNA
• Sequence: 31 - CAGGUCAACGGAGCCGUGCAUCCUG - 55
• Evidence: experimental ; Illumina [1]

Mature tca-miR-11620-3p

• Accession: MIMAT0045511
• Description: Tribolium castaneum tca-miR-11620-3p mature miRNA
• Sequence: 70 - AUGCCCGGACCGGUGCCCCAUGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96