Stem-loop tca-mir-3836f

Accession

MI0037371

Description

Tribolium castaneum tca-mir-3836f precursor miRNA

Sequence

365 reads, 44.0 reads per million, 16 experiments

auuuucugcuCGGUCUAUCCUUGCUUCGGUUGAUAuuuauuuaauuaUCACUGGGGAAAGUAGACCUUGcaguaguu
.....((((..((((((..(((.(((((((.((((..........))))))))))).)))))))))..)))).....

Structure

auuuu    uC      UC   G       U    uuua 
     cugc  GGUCUA  CUU CUUCGGU GAUA    u
     ||||  ||||||  ||| ||||||| ||||     
     gacG  CCAGAU  GAA GGGGUCA CUau    u
uugau    UU      --   A       -    uaau 

Annotation confidence High

Genome context

ref|NC_007417.3|: 1140465-1140541 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from tca-mir-3836f

Mature tca-miR-3836f-5p

• Accession: MIMAT0045506
• Description: Tribolium castaneum tca-miR-3836f-5p mature miRNA
• Sequence: 11 - CGGUCUAUCCUUGCUUCGGUUGAUA - 35
• Evidence: experimental ; Illumina [1]

Mature tca-miR-3836f-3p

• Accession: MIMAT0045507
• Description: Tribolium castaneum tca-miR-3836f-3p mature miRNA
• Sequence: 48 - UCACUGGGGAAAGUAGACCUUG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96