Stem-loop cas-MIR3435

Accession

MI0037244

Description

Camelina sativa cas-MIR3435 precursor miRNA

Sequence

ugacuuuGGCAUAAUUCUGUCAAUUCCcucauagauguaauaauguaaguugacacggagcucggcaaagaaacagugacaaugaagggcuuuuugguauuccagagauagucuuguuacaugucugaaggaauugacaguauuaugccacaaggc
...((((((((((((.(((((((((((.(((.(.((((((((......((((.(((.....((......))....))).))))...(((((((((((....))))))..))))))))))))).).))).))))))))))).))))))))).)))..

Structure

uga   -         U           c   u g        auguaaguugacacggagcucggcaaagaaacagugacaaugaa     --      u 
   cuu uGGCAUAAU CUGUCAAUUCC uca a auguaaua                                            gggcu  uuuugg a
   ||| ||||||||| ||||||||||| ||| | ||||||||                                            |||||  ||||||  
   gaa accguauua gacaguuaagg agu u uacauugu                                            ucuga  gagacc u
-cg   c         u           a   c g        --------------------------------------------     ua      u 

Annotation confidence Not enough data

Genome context

chr15: 683040-683195 [-]

Mature cas-miR3435

• Accession: MIMAT0045367
• Description: Camelina sativa cas-miR3435 mature miRNA
• Sequence: 8 - GGCAUAAUUCUGUCAAUUCC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542