Stem-loop cas-MIR827a

Accession

MI0037236

Description

Camelina sativa cas-MIR827a precursor miRNA

Literature search

1 open access papers mention cas-MIR827a
(1 sentences)

Sequence

ugaauguguuuguugauugacaucuaugcauauugaccauccucguguugaucgauuuguUUAGAUGACCAUCAACAAACGcuuucg
.(((.((((((((((((.(.((((((.(((.(((((.((.........)).))))).))).)))))).).)))))))))))).))).

Structure

u   u            u a      u   u     c  ucc 
 gaa guguuuguugau g caucua gca auuga ca   u
 ||| |||||||||||| | |||||| ||| ||||| ||   c
 cuu cGCAAACAACUA C GUAGAU ugu uagcu gu   g
g   u            C A      U   u     a  ugu 

Annotation confidence Not enough data

Genome context

chr16: 2185297-2185383 [+]

Mature cas-miR827a

• Accession: MIMAT0045359
• Description: Camelina sativa cas-miR827a mature miRNA
• Sequence: 61 - UUAGAUGACCAUCAACAAACG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542