Stem-loop cas-MIR399b

Accession

MI0037230

Description

Camelina sativa cas-MIR399b precursor miRNA

Literature search

1 open access papers mention cas-MIR399b
(1 sentences)

Sequence

uuacaGGGCAAGAUCACCAUUGGCAGAaaucuauuacuucauucuugcauaugcauaaauguuuguggugagcucucugccaaaggagauuugcccgguaau
((((.(((((.((((.((.((((((((..((.(((((..((((..(((....)))..))))...)))))))....)))))))).)).))))))))).)))).

Structure

-    a     A    A  A        --aa  u     -uu    cu   a 
 uuac GGGCA GAUC CC UUGGCAGA    uc auuac   cauu  ugc u
 |||| ||||| |||| || ||||||||    || |||||   ||||  |||  
 aaug cccgu uuag gg aaccgucu    ag uggug   guaa  acg a
u    g     -    a  a        cucg  -     uuu    au   u 

Annotation confidence Not enough data

Genome context

chr5: 8222288-8222389 [-]

Mature cas-miR399b

• Accession: MIMAT0045353
• Description: Camelina sativa cas-miR399b mature miRNA
• Sequence: 6 - GGGCAAGAUCACCAUUGGCAGA - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542