Stem-loop cas-MIR399a

Accession

MI0037229

Description

Camelina sativa cas-MIR399a precursor miRNA

Literature search

1 open access papers mention cas-MIR399a
(1 sentences)

Sequence

aguaauaGGGCAUCUUUCUAUUGGCAGGcgacucugucgauuugccucucuuuuuuuuugcauuguucuuuuggcuauuggcuaugucacuugccaaaggagaguugcccugucacu
(((.((((((((.((((((.((((((((.(((...((((((..(((..........................))).))))))...))).)))))))).)))))).)))))))).)))

Structure

   a        U      A        c   ucu      uu   ucucuuuuuuuu 
agu auaGGGCA CUUUCU UUGGCAGG gac   gucgau  gcc            u
||| |||||||| |||||| |||||||| |||   ||||||  |||             
uca ugucccgu gagagg aaccguuc cug   cgguua  cgg            g
   c        u      a        a   uau      -u   uuuucuuguuac 

Annotation confidence Not enough data

Genome context

chr18: 18070592-18070708 [-]

Mature cas-miR399a

• Accession: MIMAT0045352
• Description: Camelina sativa cas-miR399a mature miRNA
• Sequence: 8 - GGGCAUCUUUCUAUUGGCAGG - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542