Stem-loop cas-MIR397

Accession

MI0037226

Description

Camelina sativa cas-MIR397 precursor miRNA

Sequence

aacaUCAUUGAGUGCAGCGUUGAUGugauuucguuuuuucauucuuucauucuauuauugaauggauuggauuaaagcaauuuacaccagcguugcgcucaauuauguu
(((((.((((((((((((((((.(((((.((.(((((...((((.(((((((.......)))))))..)))).))))))).))))).)))))))))))))))).)))))

Structure

     C                A     u  c     uuc    -u       ua 
aacaU AUUGAGUGCAGCGUUG UGuga uu guuuu   auuc  uucauuc  u
||||| |||||||||||||||| ||||| || |||||   ||||  |||||||  u
uugua uaacucgcguugcgac acauu aa cgaaa   uagg  agguaag  a
     u                c     u  -     --u    uu       uu 

Annotation confidence Not enough data

Genome context

chr2: 2936787-2936895 [+]

Mature cas-miR397

• Accession: MIMAT0045348
• Description: Camelina sativa cas-miR397 mature miRNA
• Sequence: 5 - UCAUUGAGUGCAGCGUUGAUG - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542