Stem-loop cas-MIR396b

Accession

MI0037225

Description

Camelina sativa cas-MIR396b precursor miRNA

Literature search

1 open access papers mention cas-MIR396b
(2 sentences)

Sequence

uuuUUCCACAGCUUUCUUGAACUUuuuuuguuuucauuuccuuuuaaccaauauagcuaaacaaaaucucuaguuagcauuuuggaaacaaagaaaaagcucaagaaagcugugggaaaa
.(((((((((((((((((((.(((((((((((((((.................((((((...........))))))......))))))))..))))))).))))))))))))))))))).

Structure

u                   A       --        uuuccuuuuaaccaaua      aaca 
 uuUUCCACAGCUUUCUUGA CUUuuuu  uguuuuca                 uagcua    a
 ||||||||||||||||||| |||||||  ||||||||                 ||||||    a
 aaagggugucgaaagaacu gaaaaag  acaaaggu                 auugau    a
a                   c       aa        -----------uuuacg      cucu 

Annotation confidence Not enough data

Genome context

chr10: 18158326-18158445 [+]

Mature cas-miR396b

• Accession: MIMAT0045347
• Description: Camelina sativa cas-miR396b mature miRNA
• Sequence: 4 - UUCCACAGCUUUCUUGAACUU - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542