Stem-loop cas-MIR390a

Accession

MI0037216

Description

Camelina sativa cas-MIR390a precursor miRNA

Literature search

1 open access papers mention cas-MIR390a
(1 sentences)

Sequence

cuguaAAGCUCAGGAGGGAUAGCGCCaugaugaucauuauugacauagauuauauuuggCGCUAUCCAUCCUGAGUUUCAuugg
.....((((((((((.(((((((((((..((((((............))))))...))))))))))).))))))))))......

Structure

-cugua          G           -ug      auuau 
      AAGCUCAGGA GGAUAGCGCCa   augauc     u
      |||||||||| |||||||||||   ||||||      
      UUUGAGUCCU CCUAUCGCggu   uauuag     g
gguuAC          A           uua      auaca 

Annotation confidence Not enough data

Genome context

chr4: 24717695-24717778 [+]

Mature cas-miR390a-5p

• Accession: MIMAT0045334
• Description: Camelina sativa cas-miR390a-5p mature miRNA
• Sequence: 6 - AAGCUCAGGAGGGAUAGCGCC - 26
• Evidence: experimental ; Illumina [1]

Mature cas-miR390a-3p

• Accession: MIMAT0045335
• Description: Camelina sativa cas-miR390a-3p mature miRNA
• Sequence: 60 - CGCUAUCCAUCCUGAGUUUCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542