Stem-loop cas-MIR319c

Accession

MI0037215

Description

Camelina sativa cas-MIR319c precursor miRNA

Literature search

1 open access papers mention cas-MIR319c
(3 sentences)

Sequence

agaaggagauucuuucaguccagucauggauagaaaaagaagaggguagaaauaucugccgacucauccauccaaacacucgugguagaaaaaauauagauuuuaaaccgcagugacugugugaaugaugcgggagauauuuuugauccuucuuuaucugugUUUGGACUGAAGGGAGCUCCUucu
((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..((((........))))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))

Structure

        a              u        gaaa      a  g           g   ac    c   c  aa    c     ag    aau 
agaaggag uucuuucaguccag cauggaua    aagaag gg uagaaauaucu ccg  ucau cau ca  cacu guggu  aaaa   a
|||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  ||||    
ucuUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuuauaga ggc  agua gug gu  guga cgcca  uuuu   u
        G              U        ----      -  a           g   gu    a   u  ca    -     aa    aga 

Annotation confidence Not enough data

Genome context

chr4: 26293705-26293890 [+]

Mature cas-miR319c

• Accession: MIMAT0045333
• Description: Camelina sativa cas-miR319c mature miRNA
• Sequence: 163 - UUUGGACUGAAGGGAGCUCCU - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542