Stem-loop cas-MIR173

Accession

MI0037212

Description

Camelina sativa cas-MIR173 precursor miRNA

Literature search

1 open access papers mention cas-MIR173
(1 sentences)

Sequence

ccUUCGCUUGCAGAGAGAAAUCACaguguggucaaaagcuuuuuaagucuuuuuuaaagucucuuuccucugugauucucugugcaagcuaaag
.....(((((((.((((((.((((((...((......(((((..((.....))..)))))......)).)))))))))))).))))))).....

Structure

ccUUC       G      A      ugu  ucaaaa     uu  g 
     GCUUGCA AGAGAA UCACag   gg      gcuuu  aa u
     ||||||| |||||| ||||||   ||      |||||  || c
     cgaacgu ucucuu aguguc   cc      ugaaa  uu u
gaaau       g      -      --u  uuucuc     uu  u 

Annotation confidence Not enough data

Genome context

chr15: 14724141-14724234 [+]

Mature cas-miR173

• Accession: MIMAT0045330
• Description: Camelina sativa cas-miR173 mature miRNA
• Sequence: 3 - UUCGCUUGCAGAGAGAAAUCAC - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542