Stem-loop cas-MIR166b

Accession

MI0037188

Description

Camelina sativa cas-MIR166b precursor miRNA

Literature search

1 open access papers mention cas-MIR166b
(5 sentences)

Sequence

ggGGACUGUUGUCUGGCUCGAGGacucuuguucuaauacaaucucauuauuuggauaguuucagaucugaugauugauuagggcuuuuggugucgucggaccaggcuucauucccc
(((((.((..((((((.((((.(((((..((((((((.((((((((..(((((((....))))))).))).)))))))))))))....)).))).)))).))))))..)).)))))

Structure

     C  UU      C    G   -  --uu        a     -   uu       u 
ggGGA UG  GUCUGG UCGA Gac uc    guucuaau caauc uca  auuugga a
||||| ||  |||||| |||| ||| ||    |||||||| ||||| |||  |||||||  
ccccu ac  cggacc ggcu cug gg    cgggauua guuag agu  uagacuu g
     u  uu      a    g   u  uuuu        -     u   -c       u 

Annotation confidence Not enough data

Genome context

chr5: 34073758-34073873 [+]

Mature cas-miR166b

• Accession: MIMAT0045299
• Description: Camelina sativa cas-miR166b mature miRNA
• Sequence: 3 - GGACUGUUGUCUGGCUCGAGG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542