Stem-loop cas-MIR165b

Accession

MI0037186

Description

Camelina sativa cas-MIR165b precursor miRNA

Literature search

1 open access papers mention cas-MIR165b
(2 sentences)

Sequence

gggGAAUGUUGUUUGGAUCGAGGauaucauaucacaccauacacaaguuuauauccugauauuacgauaugcaugauacgauuguguaauaauguacauauauaugguaucgucggaccaggcuucauucccc
((((((((..((((((.((((.((((((((((.(((...(((((((.....((((.((((((....)))).)).))))...)))))))....)))......)))))))))).)))).))))))..))))))))

Structure

        UU      A    G          -----c   -cca       guuua    c  -    u 
gggGAAUG  GUUUGG UCGA Gauaucauau      aca    uacacaa     uauc ug auau a
||||||||  |||||| |||| ||||||||||      |||    |||||||     |||| || ||||  
ccccuuac  cggacc ggcu cuaugguaua      ugu    auguguu     auag ac uaua c
        uu      a    g          uauaca   aaua       --agc    u  g    g 

Annotation confidence Not enough data

Genome context

chr2: 834589-834721 [+]

Mature cas-miR165b

• Accession: MIMAT0045297
• Description: Camelina sativa cas-miR165b mature miRNA
• Sequence: 4 - GAAUGUUGUUUGGAUCGAGG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542