Stem-loop cas-MIR156i

Accession

MI0037170

Description

Camelina sativa cas-MIR156i precursor miRNA

Literature search

1 open access papers mention cas-MIR156i
(4 sentences)

Sequence

ggaggaugaCAGAAGAGAGAGAGCACAAUcagagucauggaugcaacucgucauucucucacacaacgaugcuguucucgagcuuucuucuucuucu
((((((.((..((((...(((((((..(((((((.....((((.....))))...))))........)))..)))))))...))))..)).))))))

Structure

      u  CA    AGA       CA   --------    ucaug    c 
ggagga ga  GAAG   GAGAGCA  AUc        agag     gaug a
|||||| ||  ||||   |||||||  |||        ||||     |||| a
ucuucu cu  uuuc   cucuugu  uag        ucuc     cugc c
      u  uc    gag       cg   caacacac    --uua    u 

Annotation confidence Not enough data

Genome context

chr2: 15182645-15182741 [+]

Mature cas-miR156i

• Accession: MIMAT0045278
• Description: Camelina sativa cas-miR156i mature miRNA
• Sequence: 10 - CAGAAGAGAGAGAGCACAAU - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542