Stem-loop cst-MIR11334

Accession

MI0036485

Description

Cucumis sativus cst-MIR11334 precursor miRNA

Sequence

uaaacauuuuuauuuaauaugagAAUUACUAUAAUAACACCUUCACAUucguaugcaucaauuuuguaaauauguaaggaguuuguaacaauuacuacuugguggaauaaaaguguaua
...((((((((((((..((.(((((((..(((((..((.((((.((((..((.((((.......)))).)))))))))).)))))))..)))).)).).))...))))))))))))...

Structure

uaa            -aa  u -  -    AC     UA  A    C    uc  a    uc 
   acauuuuuauuu   ua g ag AAUU  UAUAA  AC CCUU ACAU  gu ugca  a
   ||||||||||||   || | || ||||  |||||  || |||| ||||  || ||||  a
   ugugaaaauaag   gu c uc uuaa  auguu  ug ggaa ugua  ua augu  u
aua            gug  u a  a    ca     --  a    -    --  a    uu 

Annotation confidence Low

Genome context

CM002924.1: 620749-620867 [+]

Mature cst-miR11334

• Accession: MIMAT0044624
• Description: Cucumis sativus cst-miR11334 mature miRNA
• Sequence: 24 - AAUUACUAUAAUAACACCUUCACAU - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26076360
   High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L.) microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection
   Liu HW, Luo LX, Liang CQ, Jiang N, Liu PF, Li JQ
   PLoS One (2015) 10:e0129002