Accession
MI0036480
Description
Physcomitrella patens
ppt-MIR1034b precursor miRNA
Sequence
226
reads,
10.0
reads per million, 10 experiments
AAACAUGAACAUGCAGAGCGUuucaaggcucauaacguccucauucuugcaagcacaacgcugccaaagucaugacccucuuccuuacagugacugcaaauagagauauuCAUUACUUUGGCAGCGUUGUGcuugccggauugagucuuugagugauggcauacacugcauauucauguuu
(((((((((.((((((.(.((.(((..(((((.......((((.(((.((((((((((((((((((((((.((((..((((......(((...))).....))))....)))).)))))))))))))))))))))).))).))))....)))))..))).)).).)))))).)))))))))
(((((((((.((((((.(.((.(((..(((((.......((((.(((.((((((((((((((((((((((.((((..((((......(((...))).....))))....)))).)))))))))))))))))))))).))).))))....)))))..))).)).).)))))).)))))))))
Structure
C A C u ag uaacguc u u c --cc uccuua u
AAACAUGAA AUGCAG G GU uca gcuca cuca ucu gcaagcacaacgcugccaaagu auga cucu cag
||||||||| |||||| | || ||| ||||| |||| ||| |||||||||||||||||||||| |||| |||| ||| g
uuuguacuu uacguc c ua ggu ugagu gagu agg cguucGUGUUGCGACGGUUUCA UACu gaga guc
a a a c ag ---uucu u c U uaua -uaaac a
Annotation confidence
Not enough data
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Genome context
Chr17: 6852049-6852229 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1034b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1034b-5p
| Accession | MIMAT0053791 |
| Description | Physcomitrella patens ppt-miR1034b-5p mature miRNA |
| Sequence | 1 - AAACAUGAACAUGCAGAGCGU - 21 |
| Evidence |
experimental
unknown |
Mature ppt-miR1034b-3p
| Accession | MIMAT0044619 |
| Description | Physcomitrella patens ppt-miR1034b-3p mature miRNA |
| Sequence | 111 - CAUUACUUUGGCAGCGUUGUG - 131 |
| Evidence |
experimental
Illumina [1] |
References
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