Accession
MI0036476
Description
Physcomitrella patens
ppt-MIR11328 precursor miRNA
Sequence
594
reads,
25.0
reads per million, 10 experiments
ggcaagccaaggacgccgucuacaaggagcugcaguucacgaaaagugcgcuugaacaacuaucucgcuuggucgcaucuucagguaCAGAGGCUUCGAGUGGGAUUGagaagguugauugcgcauggcuugagaagguugauccCACUCGAAGUCACUGUACCUGgagaagguccuugucuccacucacugugacugcucuugaaacaugaaggggguguuuagcagaggcuaaagcugguguugcc
(((((((((.((((...))))(((((((.((..(((.(((.....))).)))..............((......)).(((((((((((((.((((((((((((((((((.....((((..((.....)))))).....)))))))))))))))))).))))))))))))))).)))))))...(((.....)))(((.(((((........)))))))).((((((....))))))..)))).)))))
(((((((((.((((...))))(((((((.((..(((.(((.....))).)))..............((......)).(((((((((((((.((((((((((((((((((.....((((..((.....)))))).....)))))))))))))))))).))))))))))))))).)))))))...(((.....)))(((.(((((........)))))))).((((((....))))))..)))).)))))
Structure
- ----------------------------------------------aggacgccgucu g gcaguucacgaaaagugcgcuugaacaacuaucucgcuuggucgca A gaagg uu g
ggcaa gcca acaagga cu ucuucagguaCAG GGCUUCGAGUGGGAUUGa uuga gc c
||||| |||| ||||||| || ||||||||||||| |||||||||||||||||| |||| || a
ccguu uggu uguuccu ga agagGUCCAUGUC CUGAAGCUCACccuaguu aguu cg u
g cgaaaucggagacgauuugugggggaaguacaaaguucucgucagugucacucaccuc g ---------------------------------------------- A ggaag -- g
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
Chr15: 15398874-15399121 [+]
Database links
Mature ppt-miR11328-5p
| Accession | MIMAT0053788 |
| Description | Physcomitrella patens ppt-miR11328-5p mature miRNA |
| Sequence | 88 - CAGAGGCUUCGAGUGGGAUUG - 108 |
| Evidence |
experimental
unknown |
Mature ppt-miR11328-3p
| Accession | MIMAT0044615 |
| Description | Physcomitrella patens ppt-miR11328-3p mature miRNA |
| Sequence | 146 - CACUCGAAGUCACUGUACCUG - 166 |
| Evidence |
experimental
Illumina [1] |
References
|
