miRBase entry: ppt-MIR11322

Stem-loop ppt-MIR11322


Accession
MI0036470
Description
Physcomitrella patens ppt-MIR11322 precursor miRNA


Sequence

172 reads, 7.0 reads per million, 10 experiments
aguagcacuauccgcugcaAGCACAGGGACAACGGAGUGUcuaggcucgcaaagugggcggagcaacgaagcagugugcuucguugaguugggcuugcucgcacuccguugucccugugcuuccgaggagaugcugcu
(((((((...(((..((.((((((((((((((((((((((.((((((((...(.(.(((((((((((......)).))))))))).).)))))))))...)))))))))))))))))))))).)).)))..)))))))

Structure
       cua   gc  c                      --c        caa g g         -  ga 
aguagca   ucc  ug aAGCACAGGGACAACGGAGUGU   uaggcucg   a u ggcggagca ac  a
|||||||   |||  || ||||||||||||||||||||||   ||||||||   | | ||||||||| ||   
ucgucgu   agg  gc uucgugucccuguugccucacg   guucgggu   u a uugcuucgu ug  g
       -ag   -a  c                      cuc        --- g g         g  ac 


Annotation confidence Not enough data
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Genome context
Chr08: 3535299-3535436 [-]

Database links

Mature ppt-miR11322-5p

Accession MIMAT0044609
Description Physcomitrella patens ppt-miR11322-5p mature miRNA
Sequence 20 - AGCACAGGGACAACGGAGUGU - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26209555
    Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
    "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
    "Plant Cell (2015) 27:2148-2162