miRBase entry: ppt-MIR11319

Stem-loop ppt-MIR11319


Accession
MI0036467
Description
Physcomitrella patens ppt-MIR11319 precursor miRNA


Sequence

9285 reads, 390.0 reads per million, 10 experiments
guuugaagcugCUACGGGGUCGUUUUGCUCGUaagggcgugagugggaauuggugaccuccaguuagggcaagauaaggguuucCAGCAGAUCGACCUCGUAGCAgcuguaaac
(((((.((((((((((((((((.((((((......(.(.(((.((((...........)))).))).).).......((....)))))))).)))))))))))))))).)))))

Structure
     a                U      CGUaagggcgugagugggaauuggugaccuccaguuagggcaagauaa  g 
guuug agcugCUACGGGGUCG UUUGCU                                                gg u
||||| |||||||||||||||| ||||||                                                ||  
caaau ucgACGAUGCUCCAGC AGACGA                                                Cc u
     g                U      ------------------------------------------------  u 


Annotation confidence Medium
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Genome context
Chr03: 21675183-21675296 [+]

Database links

Mature ppt-miR11319-5p

Accession MIMAT0044606
Description Physcomitrella patens ppt-miR11319-5p mature miRNA
Sequence 12 - CUACGGGGUCGUUUUGCUCGU - 32
Evidence experimental
Illumina [1]

Mature ppt-miR11319-3p

Accession MIMAT0053785
Description Physcomitrella patens ppt-miR11319-3p mature miRNA
Sequence 85 - CAGCAGAUCGACCUCGUAGCA - 105
Evidence experimental
unknown

References

  1. PubMed ID: 26209555
    Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants
    "Coruh C, Cho SH, Shahid S, Liu Q, Wierzbicki A, Axtell MJ"
    "Plant Cell (2015) 27:2148-2162