Stem-loop gmo-mir-11188

Accession

MI0036237

Description

Gadus morhua gmo-mir-11188 precursor miRNA

Sequence

agccuguucauuagguaccuaaagccagagcuaaugcaagucuuucacagagauagccuguucauuaggUACCUAAAGCCAGAGCUAA
((((((....((((((((((((...(((.(((.......((((((...))))))))))))....))))))))))))...))).)))..

Structure

--   -   uuca            -agc   a   aaugcaa      c 
  agc cug    uuagguaccuaa    cag gcu       gucuuu  
  ||| |||    ||||||||||||    ||| |||       |||||| a
  UCG GAC    AAUCCAUggauu    guc cga       uagaga  
AA   A   -CGA            acuu   -   -------      c 

Annotation confidence Not enough data

Genome context

CAEA01088116.1: 566-653 [+]

Mature gmo-miR-11188-3p

• Accession: MIMAT0044347
• Description: Gadus morhua gmo-miR-11188-3p mature miRNA
• Sequence: 70 - UACCUAAAGCCAGAGCUAA - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305