Stem-loop lja-MIR11155e

Accession

MI0035970

Description

Lotus japonicus lja-MIR11155e precursor miRNA

Sequence

augguauaaugaguccaugauUUUGUAAGCGAGUUUGAUUUUAGUcucucgacggaaaaaacgucaguguuuugccgaaugauuaaaaucaaacuugcuugcauuuuguaggcugcggacuaucucggcauuccaagccuuuuggaguuaaccucaugugccau
((((((((.((((..........(((((((((((((((((((((((..(((.(((((...((....)).))))).)))..)))))))))))))))))))))))........((((.(((...)))))))(((((((.....)))))))....))))))))))))

Structure

        a    ---------------------------------------uccaugauUU                       uc   a     aaa  g 
augguaua ugag                                                 UGUAAGCGAGUUUGAUUUUAGUc  ucg cggaa   ac u
|||||||| ||||                                                 |||||||||||||||||||||||  ||| |||||   ||  
uaccgugu acuc                                                 acguucguucaaacuaaaauuag  agc guuuu   ug c
        -    caauugagguuuuccgaaccuuacggcucuaucaggcgucggauguuuu                       ua   c     --g  a 

Annotation confidence Not enough data

Genome context

Chr2: 40650573-40650736 [+]

Mature lja-miR11155e-5p

• Accession: MIMAT0043994
• Description: Lotus japonicus lja-miR11155e-5p mature miRNA
• Sequence: 22 - UUUGUAAGCGAGUUUGAUUUUAGU - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256