Stem-loop lja-MIR11177

Accession

MI0035965

Description

Lotus japonicus lja-MIR11177 precursor miRNA

Sequence

306 reads, 34.0 reads per million, 9 experiments

gugcguGUUUGGAUACACAAUGGAAccacggugagccaaaucacgauggauagaaacaacuuuccuuugcuuuuggauuguccaaugUGAUUUUGACUUUACUGUGAUUucuugucgucuauccaaacauucac
(((.((((((((((((((((.((((.((((((((((.((((((((.(((((((.........(((.........)))))))))).)))))))).).).)))))))).)))))))).))..)))))))))).)))

Structure

   c          --  -    U    c        - - c        a       aaacaacuu   uuu 
gug guGUUUGGAU  AC ACAA GGAA cacgguga g c aaaucacg uggauag         ucc   g
||| ||||||||||  || |||| |||| |||||||| | | |||||||| |||||||         |||   c
cac uacaaaccua  ug uguu cuUU GUGUCAUU C G UUUAGUgu accuguu         agg   u
   u          uc  c    -    A        U A U        a       ---------   uuu 

Annotation confidence Low

Genome context

Chr1: 22914600-22914733 [+]

Mature lja-miR11177-5p

• Accession: MIMAT0043989
• Description: Lotus japonicus lja-miR11177-5p mature miRNA
• Sequence: 7 - GUUUGGAUACACAAUGGAA - 25
• Evidence: experimental ; Illumina [1]

Mature lja-miR11177-3p

• Accession: MIMAT0054735
• Description: Lotus japonicus lja-miR11177-3p mature miRNA
• Sequence: 88 - UGAUUUUGACUUUACUGUGAUU - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256