Stem-loop lja-MIR11176

Accession

MI0035964

Description

Lotus japonicus lja-MIR11176 precursor miRNA

Sequence

ggucggcccagauaggucucaaagcuuucauuggaagcuUUGAGAUCUGCUGCGGCUAGGACC
(((((((((((.(((((((((((((((((...)))))))))))))))))))).))))..))))

Structure

    --    -   a                 a 
gguc  ggcc cag uaggucucaaagcuuuc  
||||  |||| ||| ||||||||||||||||| u
CCAG  UCGG GUC GUCUAGAGUUucgaagg  
    GA    C   -                 u 

Annotation confidence Not enough data

Genome context

Chr1: 13653983-13654045 [-]

Mature lja-miR11176-3p

• Accession: MIMAT0043988
• Description: Lotus japonicus lja-miR11176-3p mature miRNA
• Sequence: 40 - UUGAGAUCUGCUGCGGCUAGGACC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256