Stem-loop lja-MIR11174

Accession

MI0035962

Description

Lotus japonicus lja-MIR11174 precursor miRNA

Sequence

agucacagcuuagugugacuguuauuguuaguuguucuguuaauaaacagcugacauaguuaguUGUUUCUGUUAGAGUACAGCUGGCucauucuguuauaguugugauu
.(((((((((....(((((.(.....(((((((((.((.((((((((((((((((...))))))))))..)))))))).))))))))).....).)))))))))))))).

Structure

a         uagu     u uuauu         u  g      --          a 
 gucacagcu    gugac g     guuaguugu cu uuaaua  aacagcugac  
 |||||||||    ||||| |     ||||||||| || ||||||  |||||||||| u
 uaguguuga    uauug c     CGGUCGACA GA GAUUGU  UUGUugauug  
u         ----     u uuacu         U  -      CU          a 

Annotation confidence Not enough data

Genome context

Chr0: 31401781-31401890 [+]

Mature lja-miR11174-3p

• Accession: MIMAT0043986
• Description: Lotus japonicus lja-miR11174-3p mature miRNA
• Sequence: 65 - UGUUUCUGUUAGAGUACAGCUGGC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256