Stem-loop lja-MIR11173

Accession

MI0035961

Description

Lotus japonicus lja-MIR11173 precursor miRNA

Sequence

uuuucucucuguuugauguuucauucauugauucaucaauaaaauuauguaugucaauuaaaacaugauauggaugacucauaacuuuccauaugugauuuuuaaaugacaugacaaaauUCUAUUGGUGGGAUAAAGAAGAGAuuagacccaaacggccgaaga
(((((...(((((((..(((((.(((.(((.((((((((((.((((.(((((((((.(((((((((.(((((((.............))))))))))..)))))).)))))).))).)))).)))))))))).))).))))))))......)))))))..)))))

Structure

     ucu       ----au     a   a   a          a    a   -      a      --   g       ugacu 
uuuuc   cuguuug      guuuc uuc uug uucaucaaua aauu ugu auguca uuaaaa  cau auaugga     c
|||||   |||||||      ||||| ||| ||| |||||||||| |||| ||| |||||| ||||||  ||| |||||||     a
agaag   ggcaaac      uAGAG AAG AAU GGGUGGUUAU Uuaa aca uacagu aauuuu  gug uauaccu     u
     -cc       ccagau     -   A   A          C    a   g      a      ua   -       uucaa 

Annotation confidence Not enough data

Genome context

Chr1: 35881840-35882004 [-]

Mature lja-miR11173-3p

• Accession: MIMAT0043985
• Description: Lotus japonicus lja-miR11173-3p mature miRNA
• Sequence: 121 - UCUAUUGGUGGGAUAAAGAAGAGA - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256