Stem-loop lja-MIR5287c

Accession

MI0035956

Description

Lotus japonicus lja-MIR5287c precursor miRNA

Sequence

716 reads, 90.0 reads per million, 9 experiments

uuacguacacccuccgguuauaaauauaaggaaaaaauAAUAUUUUAGGUUCAUUCAauaaaugcauguaucuagucaauacuagauacaugcAUUUAUUGAAUGAACCUAaaauguuauuuuuugcuuauauuugugaccggaggguguacguaa
.(((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))).

Structure

u                             g                                             c 
 uacguacacccuccgguuauaaauauaag aaaaaauAAUAUUUUAGGUUCAUUCAauaaaugcauguaucuagu a
 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  
 augcaugugggaggccaguguuuauauuc uuuuuuauuguaaaAUCCAAGUAAGUUAUUUAcguacauagauca a
a                             g                                             u 

Annotation confidence Low

Genome context

Chr4: 21002583-21002738 [+]

Mature lja-miR5287c-5p

• Accession: MIMAT0054733
• Description: Lotus japonicus lja-miR5287c-5p mature miRNA
• Sequence: 39 - AAUAUUUUAGGUUCAUUCA - 57
• Evidence: experimental ; unknown

Mature lja-miR5287c-3p

• Accession: MIMAT0043979
• Description: Lotus japonicus lja-miR5287c-3p mature miRNA
• Sequence: 94 - AUUUAUUGAAUGAACCUA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256