Stem-loop lja-MIR11155d

Accession

MI0035941

Description

Lotus japonicus lja-MIR11155d precursor miRNA

Sequence

uuagucccugcguuuguaagugAGUUUGAUUUUAGUUCCUCUAAGGcaaaaugauguuuaguggcggucuuucaguaaacguaaaaaugaucgcgacuauacguuauugucccucagaggaauuaaaaucaaacucgaauacaaauucagagacuaa
.(((((.(((.(((((((..((((((((((((((((((((((.(((...((((((((.((((.((((((...................)))))).)))).))))))))...))).))))))))))))))))))))))..))))))).))).))))).

Structure

u     c   c       ag                      A   caa        u    g      uuucagua 
 uaguc cug guuugua  ugAGUUUGAUUUUAGUUCCUCU AGG   aaugaugu uagu gcgguc        a
 ||||| ||| |||||||  |||||||||||||||||||||| |||   |||||||| |||| ||||||        a
 aucag gac uaaacau  gcucaaacuaaaauuaaggaga ucc   uuauugca auca cgcuag        c
a     a   u       aa                      c   cug        u    g      uaaaaaug 

Annotation confidence Not enough data

Genome context

Chr2: 22943913-22944069 [-]

Mature lja-miR11155d-5p

• Accession: MIMAT0043963
• Description: Lotus japonicus lja-miR11155d-5p mature miRNA
• Sequence: 23 - AGUUUGAUUUUAGUUCCUCUAAGG - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256